Fengyun-3B (FY-3B) is the second polar-orbiting satellite in the new Fengyun-three series. This paper describes the assimilation of the FY-3B Microwave Temperature Sounder (MWTS) radiances in the Chinese Numerical Weather prediction system – the Global and Regional Assimilation and PrEdiction System (GRAPES). A quality control procedure for the assimilation of the FY-3B MWTS radiance was proposed. Extensive monitoring before assimilation shows that the observations of channel 4 are notably contaminated. Channels 2 and 3 are used in this research. A cloud detection algorithm with an improved cloud-detection threshold is determined and incorporated into the impact experiments. The clear field-of-view (FOV) percentage increased from 42% to 57% with the new threshold. In addition, the newly added FOVs are located in the clear region, as demonstrated by the cloud liquid water path data from NOAA-18. The impact of the MWTS radiances on the prediction of GRAPES was researched. The observation biases of FY-3B MWTS O-B (differences between satellite observations and model simulations) significantly decreased after an empirical bias correction procedure. After assimilation, the residual biases are small. The assimilation of the FY-3B MWTS radiances shows a positive impact in the Northern Hemisphere and a neutral impact in the Southern Hemisphere.